BLASTN 2.0.6 [Sept-16-1998]
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Score E Sequences producing significant alignments: (bits) Value gb|M87014|FUNGTHI Fundulus heteroclitus gonadotropin I beta sub... 823 0.0 gb|L35070|MOZGONAIB Morone saxatilis gonadotropin I beta-subuni... 50 3e-04 emb|Z36949|CEF59E10 Caenorhabditis elegans cosmid F59E10, compl... 38 1.2 dbj|D78177|HUMQPRTASE Homo sapiens mRNA for quinolinate phospho... 38 1.2 gb|U12892|PAU12892 Pseudomonas aeruginosa PAO1 fimbrial assembl... 38 1.2 gb|AC001227|AC001227 Genomic sequence from Human 9q34, complete... 38 1.2 gb|AC004523|AC004523 Homo sapiens chromosome 19, cosmid F22329,... 36 4.7 gb|U09803|MCU09803 Mouse cytomegalovirus 1 Smith strain VR-194 ... 36 4.7 gb|L41090|HS5G4MX Murine cytomegalovirus strain G4 glycoprotein... 36 4.7 gb|L41088|HS5GMG Murine cytomegalovirus strain K181 glycoprotei... 36 4.7 gb|L41092|HS5K17BMX Murine cytomegalovirus strain K17B glycopro... 36 4.7 gb|L41089|HS5K29MX Murine cytomegalovirus strain K29 glycoprote... 36 4.7 emb|X73953|SREGLS S.rochei eglS gene 36 4.7 gb|U50550|RCU50550 Rat cytomegalovirus major DNA binding protei... 36 4.7 gb|AE000798|AE000798 Methanobacterium thermoautotrophicum from ... 36 4.7 gb|AC004306|AC004306 Drosophila melanogaster DNA sequence (P1 D... 36 4.7 gb|AC003765|AC003765 Drosophila melanogaster (P1 DS00087 (D157)... 36 4.7 gb|U96409|HSU96409 Human Xp22 contig of 3 PACS (R7-39D12, R7-13... 36 4.7
gb|M87014|FUNGTHI Fundulus heteroclitus gonadotropin I beta subunit mRNA, complete cds. Length = 415 Score = 823 bits (415), Expect = 0.0 Identities = 415/415 (100%), Positives = 415/415 (100%) Query: 1 atgcagttggttctcatggcggcggtcctggcgctggcagaagtgggatgcttcggttgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atgcagttggttctcatggcggcggtcctggcgctggcagaagtgggatgcttcggttgc 60 Query: 61 cacctgaagaatgtcagcatccccatggagagatgcggccagagggtgtgcatccacacc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cacctgaagaatgtcagcatccccatggagagatgcggccagagggtgtgcatccacacc 120 Query: 121 acgatctgcgaagggctgtgcttctctgaggacgccgtctttgaaagccctgacgaggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 acgatctgcgaagggctgtgcttctctgaggacgccgtctttgaaagccctgacgaggcg 180 Query: 181 cctgagcatagggtctgcaacggggactggtcctacgaggtgaaacacatccaggggtgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 cctgagcatagggtctgcaacggggactggtcctacgaggtgaaacacatccaggggtgt 240 Query: 241 ccggaaagcatcacctaccccgtggccacgaactgctactgctctgcgtgcaacaccaaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ccggaaagcatcacctaccccgtggccacgaactgctactgctctgcgtgcaacaccaaa 300 Query: 301 gacacatactgtacccgcctttatgcacacatacccagctgttaaactacttacatgcac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gacacatactgtacccgcctttatgcacacatacccagctgttaaactacttacatgcac 360 Query: 361 ttaaaatcctcgcgtctctttgtctgacgctgaaataaaagaagatactgctcgt 415 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ttaaaatcctcgcgtctctttgtctgacgctgaaataaaagaagatactgctcgt 415
gb|L35070|MOZGONAIB Morone saxatilis gonadotropin I beta-subunit mRNA, complete cds Length = 524 Score = 50.1 bits (25), Expect = 3e-04 Identities = 34/37 (91%), Positives = 34/37 (91%) Query: 194 tctgcaacggggactggtcctacgaggtgaaacacat 230 |||| ||||| ||||||||||| |||||||||||||| Sbjct: 299 tctgtaacggagactggtcctatgaggtgaaacacat 335
emb|Z36949|CEF59E10 Caenorhabditis elegans cosmid F59E10, complete sequence [Caenorhabditis elegans] Length = 8100 Score = 38.2 bits (19), Expect = 1.2 Identities = 22/23 (95%), Positives = 22/23 (95%) Query: 385 tgacgctgaaataaaagaagata 407 |||||||||||||||| |||||| Sbjct: 4916 tgacgctgaaataaaaaaagata 4894
dbj|D78177|HUMQPRTASE Homo sapiens mRNA for quinolinate phosphoribosyl transferase, complete cds Length = 894 Score = 38.2 bits (19), Expect = 1.2 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 73 gtcagcatccccatggaga 91 ||||||||||||||||||| Sbjct: 818 gtcagcatccccatggaga 800
gb|U12892|PAU12892 Pseudomonas aeruginosa PAO1 fimbrial assembly (pilM), (pilN), (pilO) and (pilP) genes, complete cds. Length = 2888 Score = 38.2 bits (19), Expect = 1.2 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 19 gcggcggtcctggcgctgg 37 ||||||||||||||||||| Sbjct: 1861 gcggcggtcctggcgctgg 1879
gb|AC001227|AC001227 Genomic sequence from Human 9q34, complete sequence [Homo sapiens] Length = 37584 Score = 38.2 bits (19), Expect = 1.2 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 138 gtgcttctctgaggacgcc 156 ||||||||||||||||||| Sbjct: 13620 gtgcttctctgaggacgcc 13602
gb|AC004523|AC004523 Homo sapiens chromosome 19, cosmid F22329, complete sequence [Homo sapiens] Length = 41533 Score = 36.2 bits (18), Expect = 4.7 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 391 tgaaataaaagaagatac 408 |||||||||||||||||| Sbjct: 32528 tgaaataaaagaagatac 32511
gb|U09803|MCU09803 Mouse cytomegalovirus 1 Smith strain VR-194 integral membrane protein UL100 homolog and phosphoprotein pp28 homolog genes, complete cds Length = 2429 Score = 36.2 bits (18), Expect = 4.7 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 273 ctgctactgctctgcgtg 290 |||||||||||||||||| Sbjct: 1658 ctgctactgctctgcgtg 1675
gb|L41090|HS5G4MX Murine cytomegalovirus strain G4 glycoprotein M (gM) gene, complete cds >gi|755015|gb|L41091|HS5G6MX Murine cytomegalovirus strain G6 glycoprotein M (gM) gene, complete cds Length = 1062 Score = 36.2 bits (18), Expect = 4.7 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 273 ctgctactgctctgcgtg 290 |||||||||||||||||| Sbjct: 934 ctgctactgctctgcgtg 951
gb|L41088|HS5GMG Murine cytomegalovirus strain K181 glycoprotein M (gM) gene, complete cds Length = 2291 Score = 36.2 bits (18), Expect = 4.7 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 273 ctgctactgctctgcgtg 290 |||||||||||||||||| Sbjct: 1689 ctgctactgctctgcgtg 1706
gb|L41092|HS5K17BMX Murine cytomegalovirus strain K17B glycoprotein M (gM) gene, complete cds >gi|755023|gb|L41093|HS5K17EMX Murine cytomegalovirus strain K17E glycoprotein M (gM) gene, complete cds >gi|755027|gb|L41094|HS5N1MX Murine cytomegalovirus strain N1 glycoprotein M (gM) gene, complete cds Length = 1062 Score = 36.2 bits (18), Expect = 4.7 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 273 ctgctactgctctgcgtg 290 |||||||||||||||||| Sbjct: 934 ctgctactgctctgcgtg 951
gb|L41089|HS5K29MX Murine cytomegalovirus strain K29 glycoprotein M (gM) gene, complete cds Length = 1062 Score = 36.2 bits (18), Expect = 4.7 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 273 ctgctactgctctgcgtg 290 |||||||||||||||||| Sbjct: 934 ctgctactgctctgcgtg 951
emb|X73953|SREGLS S.rochei eglS gene Length = 1470 Score = 36.2 bits (18), Expect = 4.7 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 116 acaccacgatctgcgaag 133 |||||||||||||||||| Sbjct: 278 acaccacgatctgcgaag 295
gb|U50550|RCU50550 Rat cytomegalovirus major DNA binding protein, ICP18.5, glycoprotein B and DNA polymerase genes, complete cds Length = 13356 Score = 36.2 bits (18), Expect = 4.7 Identities = 21/22 (95%), Positives = 21/22 (95%) Query: 94 tgcggccagagggtgtgcatcc 115 ||||||||| |||||||||||| Sbjct: 1919 tgcggccagcgggtgtgcatcc 1898
gb|AE000798|AE000798 Methanobacterium thermoautotrophicum from bases 36267 to 48321 (section 4 of 148) of the complete genome Length = 12055 Score = 36.2 bits (18), Expect = 4.7 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 217 gaggtgaaacacatccag 234 |||||||||||||||||| Sbjct: 3004 gaggtgaaacacatccag 2987
gb|AC004306|AC004306 Drosophila melanogaster DNA sequence (P1 DS01386 (D198)), complete sequence [Drosophila melanogaster] Length = 61849 Score = 36.2 bits (18), Expect = 4.7 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 270 gaactgctactgctctgc 287 |||||||||||||||||| Sbjct: 580 gaactgctactgctctgc 563
gb|AC003765|AC003765 Drosophila melanogaster (P1 DS00087 (D157)) DNA sequence, complete sequence [Drosophila melanogaster] Length = 41971 Score = 36.2 bits (18), Expect = 4.7 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 270 gaactgctactgctctgc 287 |||||||||||||||||| Sbjct: 41551 gaactgctactgctctgc 41534
gb|U96409|HSU96409 Human Xp22 contig of 3 PACS (R7-39D12, R7-134G1, R7-185L21) from the Roswell Park Cancer Institute, complete sequence [Homo sapiens] Length = 169465 Score = 36.2 bits (18), Expect = 4.7 Identities = 21/22 (95%), Positives = 21/22 (95%) Query: 324 tgcacacatacccagctgttaa 345 |||| ||||||||||||||||| Sbjct: 60606 tgcagacatacccagctgttaa 60585 CPU time: 0.21 user secs. 0.08 sys. secs 0.29 total secs. Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences Posted date: Jan 5, 1999 8:16 PM Number of letters in database: 929,516,821 Number of sequences in database: 390,119 Lambda K H 1.37 0.711 0.00 Gapped Lambda K H 1.37 0.711 7.29e-304 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 161458 Number of Sequences: 390119 Number of extensions: 161458 Number of successful extensions: 41954 Number of sequences better than 10.0: 20 length of query: 415 length of database: 929516821 effective HSP length: 20 effective length of query: 395 effective length of database: 921714441 effective search space: 364077204195 effective search space used: 364077204195 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 18 (36.2 bits)