BLASTN 2.0.6 [Sept-16-1998]
If you have any problems or questions with the results of this search please refer to the BLAST FAQs
Score E Sequences producing significant alignments: (bits) Value gb|M87015|FUNGTHII Fundulus heteroclitus gonadotropin II beta s... 888 0.0 gb|L35096|MOZGONAIIB Morone saxatilis (striped bass) gonadotrop... 100 4e-19 gb|L11722|AANGBS Acanthopagrus latus gonadotropin beta-subunit ... 76 6e-12 gb|S51112|S51112 thyrotropin beta subunit [human, lymphocytes, ... 46 0.005 dbj|D00578|RATTSHBA Rattus norvegicus mRNA for TSH beta subunit... 46 0.005 gb|M13897|RATTSHB Rattus norvegicus thyrotropin beta subunit (T... 46 0.005 gb|M14450|RATTSHBA2 Rat thyrotropin (TSH) beta-subunit gene, ex... 46 0.005 emb|X01454|RNTSHB Rat mRNA for thyrotropin-beta (TSH) sequence 46 0.005 gb|M10902|RATTSHBM Rat thyrotropin-beta-subunit (TSH-Beta) mRNA... 46 0.005 gb|AF060566|AF060566 Salmo salar thyrotropin beta subunit mRNA,... 44 0.021 dbj|D14692|ONHTBS Rainbow trout mRNA for thyrotropin beta-subun... 44 0.021 emb|X59889|CCGONBS2 C.carpio gene for gonadotropin beta subunit 2 42 0.082 emb|X59888|CCGONBS1 C.carpio gene for gonadotropin beta subunit 1 42 0.082
gb|M87015|FUNGTHII Fundulus heteroclitus gonadotropin II beta subunit (GTHII beta) mRNA, complete cds. Length = 448 Score = 888 bits (448), Expect = 0.0 Identities = 448/448 (100%), Positives = 448/448 (100%) Query: 1 ctcaggatagaggactgaagttttcactgatggtgtgtttgtttctgggagcctcctcat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ctcaggatagaggactgaagttttcactgatggtgtgtttgtttctgggagcctcctcat 60 Query: 61 tcatttggtccctggcacccgcggcagcagcctttcagctccctcgctgtcagctcctca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tcatttggtccctggcacccgcggcagcagcctttcagctccctcgctgtcagctcctca 120 Query: 121 accagacaatatctctagagaagaggggctgttctggctgtcacagagtggaaaccacca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 accagacaatatctctagagaagaggggctgttctggctgtcacagagtggaaaccacca 180 Query: 181 tctgcagcgggtactgcgcgaccaaggatcccaactataagacatcatataacaaagcaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tctgcagcgggtactgcgcgaccaaggatcccaactataagacatcatataacaaagcaa 240 Query: 241 tccagcatgtgtgcacttatggggatttgtactacaagacattcgagtttcctgaatgtg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tccagcatgtgtgcacttatggggatttgtactacaagacattcgagtttcctgaatgtg 300 Query: 301 tgcccggagttgacccagttgtcacctaccccgttgccctgagctgccgctgtggaggct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tgcccggagttgacccagttgtcacctaccccgttgccctgagctgccgctgtggaggct 360 Query: 361 gtgccatggccacatccgactgcaccttcgagagccttcagcctgacttttgcatgaatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gtgccatggccacatccgactgcaccttcgagagccttcagcctgacttttgcatgaatg 420 Query: 421 acatcccattttaccactagccatgtgt 448 |||||||||||||||||||||||||||| Sbjct: 421 acatcccattttaccactagccatgtgt 448
gb|L35096|MOZGONAIIB Morone saxatilis (striped bass) gonadotropin II beta-subunit mRNA, complete cds Length = 590 Score = 99.6 bits (50), Expect = 4e-19 Identities = 149/182 (81%), Positives = 149/182 (81%) Query: 243 cagcatgtgtgcacttatggggatttgtactacaagacattcgagtttcctgaatgtgtg 302 |||||||||||||| || |||| || ||||||||||||| ||| ||||||| ||| Sbjct: 259 cagcatgtgtgcacgtaccgggacttacactacaagacatttgagcttcctgactgtcca 318 Query: 303 cccggagttgacccagttgtcacctaccccgttgccctgagctgccgctgtggaggctgt 362 || || || |||||| |||||||||||||| || | |||||||| ||| || ||||| Sbjct: 319 cctggtgtggacccaaccgtcacctaccccgtggctcagagctgccactgcggccgctgt 378 Query: 363 gccatggccacatccgactgcaccttcgagagccttcagcctgacttttgcatgaatgac 422 ||||||| ||| || ||||| |||||||||||||| ||||| |||| |||||||||||| Sbjct: 379 gccatggacacgtctgactgtaccttcgagagcctgcagcccaacttctgcatgaatgac 438 Query: 423 at 424 || Sbjct: 439 at 440
gb|L11722|AANGBS Acanthopagrus latus gonadotropin beta-subunit mRNA, complete cds. Length = 533 Score = 75.8 bits (38), Expect = 6e-12 Identities = 146/182 (80%), Positives = 146/182 (80%) Query: 243 cagcatgtgtgcacttatggggatttgtactacaagacattcgagtttcctgaatgtgtg 302 |||||||||||||| || |||| ||| ||||||||||||| ||| ||||||| ||| | Sbjct: 252 cagcatgtgtgcacgtaccgggacttgcactacaagacatttgagcttcctgactgtccg 311 Query: 303 cccggagttgacccagttgtcacctaccccgttgccctgagctgccgctgtggaggctgt 362 | ||| || ||||| ||||| |||||||| ||| |||||||| ||| || |||| Sbjct: 312 ctcggtgtggacccgaccgtcacttaccccgtggccgtgagctgcaactgcggcctctgt 371 Query: 363 gccatggccacatccgactgcaccttcgagagccttcagcctgacttttgcatgaatgac 422 || |||| ||| || ||||||||||| |||||||| ||||| | || |||||||||||| Sbjct: 372 gctatggacacgtctgactgcacctttgagagcctgcagcccaatttctgcatgaatgac 431 Query: 423 at 424 || Sbjct: 432 at 433
gb|S51112|S51112 thyrotropin beta subunit [human, lymphocytes, mRNA Partial, 262 nt] Length = 262 Score = 46.1 bits (23), Expect = 0.005 Identities = 23/23 (100%), Positives = 23/23 (100%) Query: 325 cctaccccgttgccctgagctgc 347 ||||||||||||||||||||||| Sbjct: 144 cctaccccgttgccctgagctgc 166
dbj|D00578|RATTSHBA Rattus norvegicus mRNA for TSH beta subunit, partial cds Length = 369 Score = 46.1 bits (23), Expect = 0.005 Identities = 23/23 (100%), Positives = 23/23 (100%) Query: 325 cctaccccgttgccctgagctgc 347 ||||||||||||||||||||||| Sbjct: 172 cctaccccgttgccctgagctgc 194
gb|M13897|RATTSHB Rattus norvegicus thyrotropin beta subunit (TSH-beta) gene, complete cds, clones RP100-14 and RP21. Length = 5167 Score = 46.1 bits (23), Expect = 0.005 Identities = 23/23 (100%), Positives = 23/23 (100%) Query: 325 cctaccccgttgccctgagctgc 347 ||||||||||||||||||||||| Sbjct: 4876 cctaccccgttgccctgagctgc 4898
gb|M14450|RATTSHBA2 Rat thyrotropin (TSH) beta-subunit gene, exons 2 and 3. Length = 1044 Score = 46.1 bits (23), Expect = 0.005 Identities = 23/23 (100%), Positives = 23/23 (100%) Query: 325 cctaccccgttgccctgagctgc 347 ||||||||||||||||||||||| Sbjct: 715 cctaccccgttgccctgagctgc 737
emb|X01454|RNTSHB Rat mRNA for thyrotropin-beta (TSH) sequence Length = 557 Score = 46.1 bits (23), Expect = 0.005 Identities = 23/23 (100%), Positives = 23/23 (100%) Query: 325 cctaccccgttgccctgagctgc 347 ||||||||||||||||||||||| Sbjct: 357 cctaccccgttgccctgagctgc 379
gb|M10902|RATTSHBM Rat thyrotropin-beta-subunit (TSH-Beta) mRNA, complete cds. Length = 478 Score = 46.1 bits (23), Expect = 0.005 Identities = 23/23 (100%), Positives = 23/23 (100%) Query: 325 cctaccccgttgccctgagctgc 347 ||||||||||||||||||||||| Sbjct: 314 cctaccccgttgccctgagctgc 336
gb|AF060566|AF060566 Salmo salar thyrotropin beta subunit mRNA, complete cds Length = 866 Score = 44.1 bits (22), Expect = 0.021 Identities = 31/34 (91%), Positives = 31/34 (91%) Query: 322 tcacctaccccgttgccctgagctgccgctgtgg 355 ||||||||||||| ||||| ||||||| |||||| Sbjct: 318 tcacctaccccgtagccctcagctgccactgtgg 351
dbj|D14692|ONHTBS Rainbow trout mRNA for thyrotropin beta-subunit, comomplete cds Length = 875 Score = 44.1 bits (22), Expect = 0.021 Identities = 31/34 (91%), Positives = 31/34 (91%) Query: 322 tcacctaccccgttgccctgagctgccgctgtgg 355 ||||||||||||| ||||| ||||||| |||||| Sbjct: 341 tcacctaccccgtggccctcagctgccactgtgg 374
emb|X59889|CCGONBS2 C.carpio gene for gonadotropin beta subunit 2 Length = 3490 Score = 42.1 bits (21), Expect = 0.082 Identities = 45/53 (84%), Positives = 45/53 (84%) Query: 364 ccatggccacatccgactgcaccttcgagagccttcagcctgacttttgcatg 416 |||||| ||| |||||||| || | || ||||| |||||||||||||||||| Sbjct: 2401 ccatggacacgtccgactgtacgattgaaagcctgcagcctgacttttgcatg 2453
emb|X59888|CCGONBS1 C.carpio gene for gonadotropin beta subunit 1 Length = 3471 Score = 42.1 bits (21), Expect = 0.082 Identities = 45/53 (84%), Positives = 45/53 (84%) Query: 364 ccatggccacatccgactgcaccttcgagagccttcagcctgacttttgcatg 416 |||||| ||| |||||||| || | || ||||| |||||||||||||||||| Sbjct: 2383 ccatggacacgtccgactgtacgattgaaagcctgcagcctgacttttgcatg 2435 CPU time: 0.23 user secs. 0.07 sys. secs 0.30 total secs. Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences Posted date: Jan 5, 1999 8:16 PM Number of letters in database: 929,516,821 Number of sequences in database: 390,119 Lambda K H 1.37 0.711 0.00 Gapped Lambda K H 1.37 0.711 7.29e-304 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 196791 Number of Sequences: 390119 Number of extensions: 196791 Number of successful extensions: 51927 Number of sequences better than 10.0: 19 length of query: 448 length of database: 929516821 effective HSP length: 20 effective length of query: 428 effective length of database: 921714441 effective search space: 394493780748 effective search space used: 394493780748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 18 (36.2 bits)