NCBI logo

Blast 2 Sequences results

PubMed Entrez BLAST OMIM Taxonomy Structure

BLAST 2 SEQUENCES RESULTS VERSION BLASTP 2.2.12 [Aug-07-2005]

Matrix gap open: gap extension:
x_dropoff: expect: wordsize: Filter
Sequence 1 gi 11862917 inhibin [Oncorhynchus mykiss] Length 352 (1 .. 352)
Sequence 2 gi 72256202 inhibin alpha subunit [Fundulus heteroclitus] Length 346 (1 .. 346)



2 1

NOTE:Bitscore and expect value are calculated based on the size of the nr database.

Score =  379 bits (972), Expect = e-103
Identities = 191/352 (54%), Positives = 246/352 (69%), Gaps = 15/352 (4%)





Query:                           8   VLSCALLLL---WIQTLTQACQGDELPRDVVLDWFKQRLLDGLGLEQPPSPATRPLTGGR 64
                                     ++SCALL+L   WIQ++ Q C+ ++LPR VV+ WF++R+LDGLGL +PP    RP    R
Sbjct:                           1   MVSCALLVLGPLWIQSMLQVCKTEKLPRGVVVSWFRERVLDGLGLLEPPLIEQRP---NR 57

Query:                           65  ERAEAGRGHRRSTRVGRTAWAQDHRRHHQESHEQ----VILFPSSDSTCDSSDSPS-ERA 119
                                     ERA+    HR+  RV RT+ A   R  HQ S +Q    +ILFP  DS C ++D+   E +
Sbjct:                           58  ERAKPETRHRQP-RVPRTSRAV--RVSHQTSPDQDISEIILFPIPDSPCATADTEMRENS 114

Query:                           120 TSHFTYYFQSSLDNQESAITSANFWFYAGEGASRNITPLFLLTSDQQLLQVAEFPAKTTA 179
                                     +S  +Y+FQ S   Q++ +TSA+FWFYAG G   + + LF+LTS QQ LQ A+ P   ++
Sbjct:                           115 SSTLSYHFQPSTVFQKTVVTSAHFWFYAG-GLLNSSSSLFILTSAQQRLQAAQAPPTFSS 173

Query:                           180 DGWTTYHFEHHLLSALTQGPFVLQVRCPACECHANEADKMPFLHLHTRPHGPDRSPRRAA 239
                                     DGWTTY  +  +L  + +GPF LQ++  +C+ H    D+MPFLHLH RP  P RS R A 
Sbjct:                           174 DGWTTYALDQSVLGPVAEGPFRLQIQGSSCQHHIKNPDEMPFLHLHARPRAPIRSRREAP 233

Query:                           240 ATIPWFPSSIDLLMRPSQQKPEYSDCQREMINISFQELGWDNWIVHPSSFIFYYCHGTCS 299
                                      TIPW PS+I LL RPS ++P+++DC RE + ISFQELGWD+WIVHP  F FYYCHG CS
Sbjct:                           234 VTIPWSPSAIPLLQRPSHERPQHNDCHREQVEISFQELGWDSWIVHPKVFSFYYCHGNCS 293
Transforming growth factor-beta> 259                          ***********************************

Query:                           300 ALDRTTAILGIKQCCARVPGTMRSLRFTTTSDGGYSFKYETLPNIIPEECTC 351
                                     A DRT  +LGI QCCA VPGTMR +R TTTSDGGYSFKYETLPNIIP EC+C
Sbjct:                           294 ARDRTATLLGIAQCCAPVPGTMRPMRITTTSDGGYSFKYETLPNIIPVECSC 345
Transforming growth factor-beta> 294 ****************************************************
CPU time:     0.02 user secs.	    0.01 sys. secs	    0.03 total secs.

Lambda     K      H
   0.321    0.134    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1098
Number of extensions: 601
Number of successful extensions: 3
Number of sequences better than 300.0: 1
Number of HSP's better than 300.0 without gapping: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 1,000,656,685
Length adjustment: 133
Effective length of query: 219
Effective length of database: 1,000,656,552
Effective search space: 219143784888
Effective search space used: 219143784888
Neighboring words threshold: 9
X1: 16 ( 7.4 bits)
X2: 129 (49.7 bits)
X3: 129 (49.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)