Clustal_Alignment_Zebrafish_Polycomb1_2_3_Nucleotides
(Open reading frame only) Chromodomain
CLUSTAL W (1.82) Multiple Sequence Alignments
Sequence format is Pearson
Sequence 1: ZebrafishPc1 GI:21668470 1533 bp
Sequence 2: ZebrafishPc2 GI:28207625 1434 bp
Sequence 3: ZebrafishPc3 GI:27374196 1029 bp
Start of Pairwise alignments
Aligning...
Sequences (1:2) Aligned. Score: 10
Sequences (1:3) Aligned. Score: 13
Sequences (2:3) Aligned. Score: 15
Guide tree file created: [/ebi/extserv/old-work/960149.484116.dnd]
Start of Multiple Alignment
There are 2 groups
Aligning...
Group 1: Delayed
Group 2: Delayed
Sequence:3 Score:10786
Sequence:1 Score:11308
Alignment Score 8072
CLUSTAL-Alignment file created [/ebi/extserv/old-work/960149.484116.aln]
| | Your Multiple Sequence Alignment |
Clustal_Alignment_Zebrafish_Polycomb1_2_3_Nucleotides
(ORF only) Chromodomain
CLUSTAL W (1.82) multiple sequence alignment * M E L P : Tanslation using ZebrafishPc2
* M E L P A V G E H V F A V E G I E K K
ZebrafishPc2 ---ATGGAGCTGCCTGCCGTCGGGGAGCATGTCTTCGCGGTGGAGGGCATCGAGAAGAAG 57
ZebrafishPc3 ---ATGGAGCTCTCTGCCGTCGGGGAGCGGGTCTTCGCCGCTGAATCCATCATTAAACGG 57
ZebrafishPc1 ATGGAGGAGCTGAGCGCGGTGGGAGAGCAGGTCTTTGACGCCGAGTGTATCCTCAACAAA 60
****** ** ** ** **** ***** * * ** *** **
R L R K G R M E Y L V K W R G W S P K Y
ZebrafishPc2 CGCCTACGGAAGGGTAGAATGGAGTATCTGGTGAAGTGGAGAGGATGGTCACCCAAATAT 117
ZebrafishPc3 CGCATAAGGAGAGGGCGGATGGAGTATCTGGTCAAATGGAAAGGCTGGTCTCAAAAATAC 117
ZebrafishPc1 CGCACGAGGAAGGGCAAACTGGAGTATCTGGTCAAGTGGAGAGGATGGTCGTCCAAGCAT 120
*** *** ** ************* ** **** *** ***** ** *
N T W E P E E N I L D P R L L V A F Q N
ZebrafishPc2 AACACATGGGAACCGGAGGAAAACATTCTTGACCCGCGCCTTCTTGTCGCTTTCCAAAAC 177
ZebrafishPc3 AGCACCTGGGAGCCAGAGGAGAATATTCTGGATGAGCGTCTTTTCGCTGCTTTTGAAGAA 177
ZebrafishPc1 AACAGTTGGGAACCTCAGGAAAACCTTCTTGACCCGAGACTATTGGTTGCATTTAACAAG 180
* ** ***** ** **** ** **** ** * * ** * * ** ** * *
R E R Q E Q M V G Y R K R G P K P K H
ZebrafishPc2 AGAGAAAGGCAGGAGCAAATGGTGGGATATCGAAAAAGAGGGCCTAAACCCAAACACCC- 236
ZebrafishPc3 AGGGAGCGTGAGAGGGAGATGTATGGGCCAAAAAAGAGAGGACCTAAACCAGAAACGTT- 236
ZebrafishPc1 AGGGAGCAGGAGAAGGAACTCTTGATAAGCAAAAAGGGGAAACGGCCTCGTGGACGACCC 240
** ** ** * * * *** * * * *
ZebrafishPc2 -----ACTGATCCAGCTTCCCGCATTTGCTCGTAGATCAAGCATC-CTGGGTGGTCTTCA 290
ZebrafishPc3 -----TCTAATGAAG------GCA-------AAAGCTAAAGCAAA-AAGCAAAACCTACG 277
ZebrafishPc1 AGAAAAATAATGGAAACTATTCCAGTGGTGTCAAAGTCAAGCAGCTCATCCTCGTCTTCA 300
* ** * ** * * ***** ** *
ZebrafishPc2 GGACACATCATTGGATGAGGAAAACCAGCCCAAGGTGGATTCCCTCCAGATG----CACC 346
ZebrafishPc3 AGTTTGGACGAGAGATGTCCAGAGATATAC----GTGTGTCTTTTCCAGTAG----CAGA 329
ZebrafishPc1 TCCTCTTCTGGTTCTTCGTCATCTTCCTCATCATCATCCTCTTCTACAGATGACGACGAT 360
* * * * *** * *
ZebrafishPc2 GCTCACGGCCGCAGCACTACCAGCTGAACAGTAAAAAACACCACCAGTACCAGCCAAGCT 406
ZebrafishPc3 ACCTGTTGTGACACCCAGAGCACGTGAGGGACTGCGGACAGTTGTGCCAACAATCTTTCC 389
ZebrafishPc1 GAAGACGACCACAACATGACTCCAAAGCCGATTCCTCGTCCTCGAGAGCATCTCCCGGTC 420
** * * *
ZebrafishPc2 GCAAGGAGATCTCCGTCGA--GCAGCATATGAGCGGGAAAAAGAAACACTTCTACCAGCT 464
ZebrafishPc3 ACCTAGCACCATTAACAGA--GGCGAAAGTGTTCGTGTGCGTCCACCAGA-CTCTGAAAG 446
ZebrafishPc1 CCGCAGAAGAAAGCGCAGATCGTCGTGGCCAAGCCAGGGCCGCCAAAGAAGCGAGGGAGG 480
* * ** * * * * * *
ZebrafishPc2 GAA------CAGCAAGAAACATCATC---ACTACCAGCCG---GACCCCAAGATGTACGA 512
ZebrafishPc3 AGA------CACCCTGACACAT-GGC---ACTTCAATCCA---GTGCCCACTTGATTTTG 493
ZebrafishPc1 AAAGCGCTGCCTCCGGAGCTGAAGGCCATACGTCAAGTTAAAGGTACTCGGAAGATCCTC 540
* * * ** * ** * * * * * *
ZebrafishPc2 CACGCCACTCACGGGGCCCAAAGAGGTCAAGGG-TCAAGACCCTTCCAA---CAAAGGCT 568
ZebrafishPc3 C---CAACTCACCAAAAAAGCGAGGACCAAAGC-CAAAAATGCATCCAG---CTGGAGG- 545
ZebrafishPc1 AAACCCATTTCCAGAGACTCGGATCTCCGAGGCATAAAGAAACCTCTCATGCCTGCAAGC 600
* * * * * * * ** * * ** *
ZebrafishPc2 GGAACCTCCCTCCA--------GCCCTACAACAGAAGTGGATTCGCAACAAAGACACCGG 620
ZebrafishPc3 GTCATCCTCTGAAG--------GCATTAAAAGAAAGGCAGATGAATCGTTATCTTACCGC 597
ZebrafishPc1 TTCACCTACACCGGCTTGAATCGCACCTCAGGAAGGGAGCCGATGGCAATGCATAACCGA 660
* * * ** * * * ****
ZebrafishPc2 CTGCCTGAGTAAAGTGAAAGATCTGTCTATCGAGCTCAAG----GGTTTGCCGGATAATG 676
ZebrafishPc3 CCTTCCAA---AACCGAGAGATCAGGAGA--GACCTCTAACTGTGATATCATGCATTTTA 652
ZebrafishPc1 GGGTCTTTTACACACAAGAGTTCCTTAAGCTCCCTTGGACGCTCCATCGGATCCGTTTCA 720
* * * ** ** * * * *
ZebrafishPc2 ---CTAACAAA-GCAGAGCGGA---CACTCA--AGACGAGTGCCAAAGAGTTTGCACTTC 727
ZebrafishPc3 ---CCCAGAAATACAAAGCAGAAACCACCCA--TGATGGGAAGCAAATGGGAAGCAGATC 707
ZebrafishPc1 TCTCCTCCAACACTAAATCGGTCGCCGCAAACTAAATCTGCTTCAGATTTCAAGCTCTCC 780
* ** * * * * * * * * * ** * ** *
ZebrafishPc2 CTAAT-GGCATCAGCAGCAAGATGAAAATAATCAAGAACAAAAACAAA---AACGGCCGA 783
ZebrafishPc3 C-AGT-GATGTGA-----AATTTTCACATGGTGGAAGCTTCTTAAAAG---CTGGGCTAG 757
ZebrafishPc1 GTCTCAGATATGAACAGCGGACTTGATCCCAAGACTCCCACGTGCAAATCTCCAGGTGTA 840
* * * * * ** **
ZebrafishPc2 ATTGTCATTGTAATGAGCAAATA-CATGGACAAAGGTGT-----GCATTCATCCAA--AG 835
ZebrafishPc3 GCATTTTGGGACATCGACAAAAG-GTTGGCTCTGGTGGT-----GCCATAAACCAACAAG 811
ZebrafishPc1 GCCGCACTGAATCTGCACAGCAGTAATGGACAGACGTGTCCACAACTCTCTCCCACTGTG 900
* ** *** ** * * *** *
ZebrafishPc2 T--AAAGAACAGGGA-TGTTTCTCAAGTGGGAAC---------GGTACACAATGAGGA-A 882
ZebrafishPc3 C--TAAGATGAAGCA-TCCTCCCAAA-----AAC---------AATCTATATCGA----- 849
ZebrafishPc1 CCGAAAGATCAGACCCTGCTTCAAAGGTCAGCATCTCTCCCGAAATCCCCATCAAGCTCA 960
**** * * * * * * * * *
ZebrafishPc2 CCTCCAGTGAATGGTACGGACAATCGGTCTGA--TGGTGAAACACCAGATCAA--GGAGA 938
ZebrafishPc3 --TCCACTGATCAAACCAGAGAGCAGCTCTCT--CTGAGCTTTGT-AGATGAT--ACAGA 902
ZebrafishPc1 TTTTCATCTCTCAAAACTCCTTCCAGCCTTCAAGCTCTCAATCTGCAGAGCGTCAACAAA 1020
* ** * * * *** * *
ZebrafishPc2 A-GGCCGTGAGAA---TGGTTCTATTGAGAAACCCAGTGAATATGTTGATGAAAAGTCTC 994
ZebrafishPc3 CCAGTCCTGGC-----TGCCTTGTTTGAAGAATATGGAGAAAATTGTTGTTACTGATGTA 957
ZebrafishPc1 ACAGTGCAGGGAAACGGGACTGATTTGAAGACTTCCCCGCATTCTGGAAGGAAAAGTTCT 1080
* * * * **** * * * * *
ZebrafishPc2 TCAGAAAGGATATGC-CTGGACAAAAAGCCACAGAAATATGCGACCGACCAAACTCTTCG 1053
ZebrafishPc3 ACAAGTAACTCAT----TGACTGTAACCATAAAAGAGAGTTCAACAGAC-AAAGGGTTCT 1012
ZebrafishPc1 GGATTTAACACAAGTTCTGCACCAAACACTCCTAGCAAGTTCCAGACCTCACAGCAAGCC 1140
* * * ** ** * * * * * *
ZebrafishPc2 CCAGCGAAG--GTAGACGCC-AAATCAAATCACCTTAAGAGGCATCTTTCAGAGCCCAGC 1110
ZebrafishPc3 TTAAAGAAA--ACAGATAA----------------------------------------- 1029
ZebrafishPc1 TTAAAGAGTCCACAGAAATTGAAAGCGGATGATTTGGCTGAAAGACTTGGGAAGAAAAGC 1200
* ** ***
ZebrafishPc2 GAGGACGTGAGAAACTGTAAGCAGCTC-CTGAGCTTCAGGAGCATCAGT--GCGCCAAAC 1167
ZebrafishPc3 ------------------------------------------------------------
ZebrafishPc1 CAAGCTAGAACAGAAAAGATTCTGCCAACAGAGGGTCGAGATTCTCAACCGGCGCAAGAC 1260
ZebrafishPc2 TCTTCCCCTCAGAGAGAACCTATAAACCTGCATTACAAAAGCAGCCCTGTGGATAATT-- 1225
ZebrafishPc3 ------------------------------------------------------------
ZebrafishPc1 AGACCCTCGTCTAAAGATCCCAGCAAACAGAGCAAGACCTTGAGCGAATTGAGCACCGGA 1320
ZebrafishPc2 -ACGACTTTAGCGACTCTATTCCCGAAGAGCCTATTGATTTGAGCGCCAAAACTCTAAAA 1284
ZebrafishPc3 ------------------------------------------------------------
ZebrafishPc1 GAGGAGGGAAGCAGCTCCGATACCGACCATGATTCCTCATTTCCCAGGGACAGCCATGAC 1380
ZebrafishPc2 CGGTTCACTGCTTTGGACAAAGTTTCAGGAAGCTCAGCACAAATGGACAAAACAGACAGC 1344
ZebrafishPc3 ------------------------------------------------------------
ZebrafishPc1 TTGTCCATCTCTGTGCAAGCAGGTCAGGATTGGAGGCCGACACGGAGCCTGATTGAGCAT 1440
ZebrafishPc2 CAATGTAAAGCCTTCGTGGGAAACGTTATCATCACTGATATCACCACGAACTGCTTGACC 1404
ZebrafishPc3 ------------------------------------------------------------
ZebrafishPc1 GTGTTTGTCACTGACGTCACTGCAAACCTGGTCACAGTAACAGTGAAGGAATCTCCAACC 1500
ZebrafishPc2 GTTACCTTTAAAGAATACGTTCAAGAATGA--- 1434
ZebrafishPc3 ---------------------------------
ZebrafishPc1 AGCGTTGGGTTTTTTAGCATTCGGAATTATTGA 1533
 |
(
ZebrafishPc1:0.45540,
ZebrafishPc2:0.43791,
ZebrafishPc3:0.40757);
|
